//! [Nearest neighbor search](https://en.wikipedia.org/wiki/Nearest_neighbor_search) interfaces. use crate::distance::{Distance, Proximity}; /// A nearest neighbor. #[derive(Clone, Copy, Debug)] pub struct Neighbor { /// The neighbor itself. pub item: V, /// The distance from the target to this neighbor. pub distance: D, } impl Neighbor { /// Create a new Neighbor. pub fn new(item: V, distance: D) -> Self { Self { item, distance } } } impl PartialEq> for Neighbor where V1: PartialEq, D1: PartialEq, { fn eq(&self, other: &Neighbor) -> bool { self.item == other.item && self.distance == other.distance } } /// Accumulates nearest neighbor search results. /// /// Type parameters: /// /// * `K`: The type of the search target (the "key" type) /// * `V`: The type of neighbors this contains (the "value" type) /// /// Neighborhood implementations keep track of the current search radius and accumulate the results, /// work which would otherwise have to be duplicated for every nearest neighbor search algorithm. /// They also serve as a customization point, allowing for functionality to be injected into any /// [NearestNeighbors] implementation (for example, filtering the result set or limiting the number /// of neighbors considered). pub trait Neighborhood, V> { /// Returns the target of the nearest neighbor search. fn target(&self) -> K; /// Check whether a distance is within the current search radius. fn contains(&self, distance: D) -> bool where D: PartialOrd; /// Consider a new candidate neighbor. /// /// Returns `self.target().distance(item)`. fn consider(&mut self, item: V) -> K::Distance; } /// A [Neighborhood] with at most one result. #[derive(Debug)] struct SingletonNeighborhood { /// The search target. target: K, /// The current threshold distance. threshold: Option, /// The current nearest neighbor, if any. neighbor: Option>, } impl SingletonNeighborhood { /// Create a new singleton neighborhood. /// /// * `target`: The search target. /// * `threshold`: The maximum allowable distance. fn new(target: K, threshold: Option) -> Self { Self { target, threshold, neighbor: None, } } /// Convert this result into an optional neighbor. fn into_option(self) -> Option> { self.neighbor } } impl Neighborhood for SingletonNeighborhood where K: Copy + Proximity, { fn target(&self) -> K { self.target } fn contains(&self, distance: D) -> bool where D: PartialOrd, { self.threshold.map_or(true, |t| distance <= t) } fn consider(&mut self, item: V) -> K::Distance { let distance = self.target.distance(&item); if self.contains(distance) { self.threshold = Some(distance); self.neighbor = Some(Neighbor::new(item, distance)); } distance } } /// A [Neighborhood] of up to `k` results, using a binary heap. #[derive(Debug)] struct HeapNeighborhood<'a, K, V, D> { /// The target of the nearest neighbor search. target: K, /// The number of nearest neighbors to find. k: usize, /// The current threshold distance to the farthest result. threshold: Option, /// A max-heap of the best candidates found so far. heap: &'a mut Vec>, } impl<'a, K, V, D: Distance> HeapNeighborhood<'a, K, V, D> { /// Create a new HeapNeighborhood. /// /// * `target`: The search target. /// * `k`: The maximum number of nearest neighbors to find. /// * `threshold`: The maximum allowable distance. /// * `heap`: The vector of neighbors to use as the heap. fn new( target: K, k: usize, mut threshold: Option, heap: &'a mut Vec>, ) -> Self { // A descending array is also a max-heap heap.reverse(); if k > 0 && heap.len() == k { let distance = heap[0].distance; if threshold.map_or(true, |t| distance <= t) { threshold = Some(distance); } } Self { target, k, threshold, heap, } } /// Push a new element into the heap. fn push(&mut self, item: Neighbor) { let mut i = self.heap.len(); self.heap.push(item); while i > 0 { let parent = (i - 1) / 2; if self.heap[i].distance > self.heap[parent].distance { self.heap.swap(i, parent); i = parent; } else { break; } } } /// Restore the heap property by lowering the root. fn sink_root(&mut self, len: usize) { let mut i = 0; let dist = self.heap[i].distance; loop { let mut child = 2 * i + 1; let right = child + 1; if right < len && self.heap[child].distance < self.heap[right].distance { child = right; } if child < len && dist < self.heap[child].distance { self.heap.swap(i, child); i = child; } else { break; } } } /// Replace the root of the heap with a new element. fn replace_root(&mut self, item: Neighbor) { self.heap[0] = item; self.sink_root(self.heap.len()); } /// Sort the heap from smallest to largest distance. fn sort(&mut self) { for i in (0..self.heap.len()).rev() { self.heap.swap(0, i); self.sink_root(i); } } } impl<'a, K, V> Neighborhood for HeapNeighborhood<'a, K, V, K::Distance> where K: Copy + Proximity, { fn target(&self) -> K { self.target } fn contains(&self, distance: D) -> bool where D: PartialOrd, { self.k > 0 && self.threshold.map_or(true, |t| distance <= t) } fn consider(&mut self, item: V) -> K::Distance { let distance = self.target.distance(&item); if self.contains(distance) { let neighbor = Neighbor::new(item, distance); if self.heap.len() < self.k { self.push(neighbor); } else { self.replace_root(neighbor); } if self.heap.len() == self.k { self.threshold = Some(self.heap[0].distance); } } distance } } /// A [nearest neighbor search] index. /// /// Type parameters: /// /// * `K`: The type of the search target (the "key" type) /// * `V`: The type of the returned neighbors (the "value" type) /// /// In general, exact nearest neighbor searches may be prohibitively expensive due to the [curse of /// dimensionality]. Therefore, NearestNeighbor implementations are allowed to give approximate /// results. The marker trait [ExactNeighbors] denotes implementations which are guaranteed to give /// exact results. /// /// [nearest neighbor search]: https://en.wikipedia.org/wiki/Nearest_neighbor_search /// [curse of dimensionality]: https://en.wikipedia.org/wiki/Curse_of_dimensionality pub trait NearestNeighbors, V = K> { /// Returns the nearest neighbor to `target` (or `None` if this index is empty). fn nearest(&self, target: &K) -> Option> { self.search(SingletonNeighborhood::new(target, None)) .into_option() } /// Returns the nearest neighbor to `target` within the distance `threshold`, if one exists. fn nearest_within(&self, target: &K, threshold: D) -> Option> where D: TryInto, { if let Ok(distance) = threshold.try_into() { self.search(SingletonNeighborhood::new(target, Some(distance))) .into_option() } else { None } } /// Returns the up to `k` nearest neighbors to `target`. /// /// The result will be sorted from nearest to farthest. fn k_nearest(&self, target: &K, k: usize) -> Vec> { let mut neighbors = Vec::with_capacity(k); self.merge_k_nearest(target, k, &mut neighbors); neighbors } /// Returns the up to `k` nearest neighbors to `target` within the distance `threshold`. /// /// The result will be sorted from nearest to farthest. fn k_nearest_within( &self, target: &K, k: usize, threshold: D, ) -> Vec> where D: TryInto, { let mut neighbors = Vec::with_capacity(k); self.merge_k_nearest_within(target, k, threshold, &mut neighbors); neighbors } /// Merges up to `k` nearest neighbors into an existing sorted vector. fn merge_k_nearest<'v>( &'v self, target: &K, k: usize, neighbors: &mut Vec>, ) { self.search(HeapNeighborhood::new(target, k, None, neighbors)) .sort(); } /// Merges up to `k` nearest neighbors within the `threshold` into an existing sorted vector. fn merge_k_nearest_within<'v, D>( &'v self, target: &K, k: usize, threshold: D, neighbors: &mut Vec>, ) where D: TryInto, { if let Ok(distance) = threshold.try_into() { self.search(HeapNeighborhood::new(target, k, Some(distance), neighbors)) .sort(); } } /// Search for nearest neighbors and add them to a neighborhood. fn search<'k, 'v, N>(&'v self, neighborhood: N) -> N where K: 'k, V: 'v, N: Neighborhood<&'k K, &'v V>; } /// Marker trait for [NearestNeighbors] implementations that always return exact results. pub trait ExactNeighbors, V = K>: NearestNeighbors {} #[cfg(test)] pub mod tests { use super::*; use crate::euclid::{Euclidean, EuclideanDistance}; use crate::exhaustive::ExhaustiveSearch; use rand::prelude::*; type Point = Euclidean<[f32; 3]>; /// Test an [ExactNeighbors] implementation. pub fn test_exact_neighbors(from_iter: F) where T: ExactNeighbors, F: Fn(Vec) -> T, { test_empty(&from_iter); test_pythagorean(&from_iter); test_random_points(&from_iter); } fn test_empty(from_iter: &F) where T: NearestNeighbors, F: Fn(Vec) -> T, { let points = Vec::new(); let index = from_iter(points); let target = Euclidean([0.0, 0.0, 0.0]); assert_eq!(index.nearest(&target), None); assert_eq!(index.nearest_within(&target, 1.0), None); assert!(index.k_nearest(&target, 0).is_empty()); assert!(index.k_nearest(&target, 3).is_empty()); assert!(index.k_nearest_within(&target, 0, 1.0).is_empty()); assert!(index.k_nearest_within(&target, 3, 1.0).is_empty()); } fn test_pythagorean(from_iter: &F) where T: NearestNeighbors, F: Fn(Vec) -> T, { let points = vec![ Euclidean([3.0, 4.0, 0.0]), Euclidean([5.0, 0.0, 12.0]), Euclidean([0.0, 8.0, 15.0]), Euclidean([1.0, 2.0, 2.0]), Euclidean([2.0, 3.0, 6.0]), Euclidean([4.0, 4.0, 7.0]), ]; let index = from_iter(points); let target = Euclidean([0.0, 0.0, 0.0]); assert_eq!( index.nearest(&target).expect("No nearest neighbor found"), Neighbor::new(&Euclidean([1.0, 2.0, 2.0]), 3.0) ); assert_eq!(index.nearest_within(&target, 2.0), None); assert_eq!( index.nearest_within(&target, 4.0).expect("No nearest neighbor found within 4.0"), Neighbor::new(&Euclidean([1.0, 2.0, 2.0]), 3.0) ); assert!(index.k_nearest(&target, 0).is_empty()); assert_eq!( index.k_nearest(&target, 3), vec![ Neighbor::new(&Euclidean([1.0, 2.0, 2.0]), 3.0), Neighbor::new(&Euclidean([3.0, 4.0, 0.0]), 5.0), Neighbor::new(&Euclidean([2.0, 3.0, 6.0]), 7.0), ] ); assert!(index.k_nearest(&target, 0).is_empty()); assert_eq!( index.k_nearest_within(&target, 3, 6.0), vec![ Neighbor::new(&Euclidean([1.0, 2.0, 2.0]), 3.0), Neighbor::new(&Euclidean([3.0, 4.0, 0.0]), 5.0), ] ); assert_eq!( index.k_nearest_within(&target, 3, 8.0), vec![ Neighbor::new(&Euclidean([1.0, 2.0, 2.0]), 3.0), Neighbor::new(&Euclidean([3.0, 4.0, 0.0]), 5.0), Neighbor::new(&Euclidean([2.0, 3.0, 6.0]), 7.0), ] ); let mut neighbors = Vec::new(); index.merge_k_nearest(&target, 3, &mut neighbors); assert_eq!( neighbors, vec![ Neighbor::new(&Euclidean([1.0, 2.0, 2.0]), 3.0), Neighbor::new(&Euclidean([3.0, 4.0, 0.0]), 5.0), Neighbor::new(&Euclidean([2.0, 3.0, 6.0]), 7.0), ] ); neighbors = vec![ Neighbor::new(&target, EuclideanDistance::from_squared(0.0)), Neighbor::new(&Euclidean([3.0, 4.0, 0.0]), EuclideanDistance::from_squared(25.0)), Neighbor::new(&Euclidean([2.0, 3.0, 6.0]), EuclideanDistance::from_squared(49.0)), ]; index.merge_k_nearest_within(&target, 3, 4.0, &mut neighbors); assert_eq!( neighbors, vec![ Neighbor::new(&target, 0.0), Neighbor::new(&Euclidean([1.0, 2.0, 2.0]), 3.0), Neighbor::new(&Euclidean([3.0, 4.0, 0.0]), 5.0), ] ); } fn test_random_points(from_iter: &F) where T: NearestNeighbors, F: Fn(Vec) -> T, { let mut points = Vec::new(); for _ in 0..256 { points.push(Euclidean([random(), random(), random()])); } let index = from_iter(points.clone()); let eindex = ExhaustiveSearch::from_iter(points.clone()); let target = Euclidean([random(), random(), random()]); assert_eq!( index.k_nearest(&target, 3), eindex.k_nearest(&target, 3), "target: {:?}, points: {:#?}", target, points, ); } }